Papáček Štěpán, Schuster Milan, Urban Jan. “On tank hydrodynamics of recirculating aquaculture systems: Computational fluid dynamics modeling and its validation” Proceedings of the 38th conference on COMPUTATIONAL MECHANICS 2023 (CM 2023), p. 151-154. https://www.kme.zcu.cz/compmech/download/proceedings/CM2023_Conference_Proceedings.pdf

Mougin, Julia, Victor Lobanov, Morgane Danion, Roxane Roquigny, Lionel Goardon, Thierry Grard, Thierry Morin, Laurent Labbé, and Alyssa Joyce (2023). Effects of Dietary Co-exposure to Fungal and Herbal Functional Feed Additives on Immune Parameters and Microbial Intestinal Diversity in Rainbow Trout (Oncorhynchus Mykiss). Fish & Shellfish Immunology 137, (2023): 108773.

Xie, Xuan, Roman Franěk, Martin Pšenička, Fan Chen, and Vojtech Kašpar. (2023). Optimization of in Vitro Culture Conditions of Common Carp Germ Cells for Purpose of Surrogate Production. Frontiers in Veterinary Science 9, (2022): 1036495. Accessed December 15, 2023.

Saad, Aya & Su, Biao & Bjørnson, Finn Olav. (2023). A Web-Based Platform for Efficient and Robust Simulation of Aquaculture Systems using Integrated Intelligent Agents. Procedia Computer Science.

Holhorea, Paul & Naya-Català, Fernando & Belenguer, Alvaro & Calduch-Giner, Josep & Pérez-Sánchez, Jaume. (2023). Understanding how high stocking densities and concurrent limited oxygen availability drive social cohesion and adaptive features in regulatory growth, antioxidant defense and lipid metabolism in farmed gilthead sea bream (Sparus aurata). Frontiers in Physiology. 14. 10.3389/fphys.2023.1272267.


Toxqui Rodriguez, Socorro & Naya-Català, Fernando & Sitjà-Bobadilla, Ariadna & Piazzon, Carla & Pérez-Sánchez, Jaume. (2023). Fish microbiomics: Strengths and limitations of MinION sequencing of gilthead sea bream (Sparus aurata) intestinal microbiota. Aquaculture. 569.

Nayak, Rigolin & Franěk, Roman & Sindelka, Radek & Psenicka, Martin. (2023). Enhancement of zebrafish sperm production via a large body-sized surrogate with germ cell transplantation. Communications Biology. 6. 10.1038/s42003-023-04800-7.

Tatyana Gebauer, Radek Gebauer, Petr Císař, Jan Černý, Deepali Rahi Roy, Mahyar Zare, Marieke Verleih, Vlastimil Stejskal, Alexander Rebl,
Are bold-shy personalities of European perch (Perca fluviatilis) linked to stress tolerance and immunity? A scope of harnessing fish behavior in aquaculture (2023) Fish & Shellfish Immunology, Volume 143, 109190. This publication is based on a study carried out by the TNA program.

Lukic, Jovanka & Gyalog, Gergo & Horváth, Zoltán & Szucs, Anita & Ristović, Tijana & Terzic-Vidojevic, Amarela & Sandor, Zsuzsanna & Ljubobratovic, Uros. (2023). Evaluation of Post-Larval Diets for Indoor Weaned Largemouth Bass (Micropterus salmoides). Animals. 13. 10.3390/ani13203179.  This publication is based on a study carried out by the TNA program.


Pinel, Karine & Heraud, Cécile & Morin, Guillaume & Dias, Karine & Marcé, Annaëlle & Beauclair, Linda & Fontagné-Dicharry, Stéphanie & Masagounder, Karthik & Klünemann, Martina & Seiliez, Iban & Beaumatin, Florian. (2022). Are the Main Methionine Sources Equivalent? A Focus on DL-Methionine and DL-Methionine Hydroxy Analog Reveals Differences on Rainbow Trout Hepatic Cell Lines Functions. International journal of molecular sciences. 23. 10.3390/ijms23062935.

Calduch-Giner Josep, Holhorea Paul George, Ferrer Miguel Ángel, Naya-Català Fernando, Rosell-Moll Enrique, Vega García Carlos, Prunet Patrick, Espmark Åsa M., Leguen Isabelle, Kolarevic Jelena, Vega Aurelio, Kerneis Thierry, Goardon Lionel, Afonso Juan Manuel, Pérez-Sánchez Jaume. Revising the Impact and Prospects of Activity and Ventilation Rate Bio-Loggers for Tracking Welfare and Fish-Environment Interactions in Salmonids and Mediterranean Farmed Fish. Frontiers in Marine Science, Vol.9, 2022.

Viktoriia Iegorova, Ravindra Naraine, Martin Psenicka, Monika Zelazowska, Radek Sindelka. Comparison of RNA localization during oogenesis within Acipenser ruthenus and Xenopus laevis. Frontiers in Cell and Developmental Biologu, Volume 10 – 2022.

Ana Herrero, Oswaldo Palenzuela, Hamish Rodger, Chris Matthews, Mar Marcos-López, James E. Bron, Mark P. Dagleish, Kim D. Thompson. Novel DNA-based in situ hybridization method to detect Desmozoon lepeophtherii in Atlantic salmon tissues. Journal of Fish Diseases, Volume 45, Issue 6, June 2022, Pages 871-882.  This publication is resulting from a TNA project.

Najafpour, Babak, Pinto, Patricia I.S., Canario, Adelino V.M., & Power, Deborah M. (2022). Quantifying dominant bacterial genera detected in fish eggs and larvae metagenomic 16S rRNA gene data using genus-specific primers. Microbiologyopen, Volume 11, Issue 3, June 2022, e1274.

Vojtěch Kašpar, Martin Hubálek, Martin Pšenička, Katsutoshi Arai, John B. Taggart, Roman Franěk, Cold-shock androgenesis in common carp (Cyprinus carpio), Aquaculture, Volume 548, Part 1, 2022, 737610.

Roman Franěk, Yu Cheng, Michaela Fučíková, Vojtěch Kašpar, Xuan Xie, Mujahid Ali Shah, Otomar Linhart, Ivo Šauman, Martin Pšenička, Who is the best surrogate for germ stem cell transplantation in fish?, Aquaculture, Volume 549, 2022, 737759.

Peixoto, D., Torreblanca, A., Pereira, S., Vieira, M.N., Varo, I. (2022). Effect of short-term exposure to fluorescent red polymer microspheres on Artemia franciscana nauplii and juveniles. Environmental Science and Pollution Research (29). 6080-6092 This publication is resulting from a TNA project.

Dinara Bekkozhayeva and Petr Cisar. Image-Based Automatic Individual Identification of Fish without Obvious Patterns on the Body (Scale Pattern). Applied Sciences. 2022; 12(11):5401.  This publication is resulting from a TNA project. 

Massimo, M., Volpatti, D., Galeotti, M., Bron, J.E., Beraldo, P. (2022). News Insights into the Host-Parasite Interactions of Amyloodiniosis in European Sea Bass: A Multi-Modal Approach. Pathogens 11(1), 62. This publication is resulting from a TNA project.


Káldy, J.; Patakiné Várkonyi, E.; Fazekas, G.L.; Nagy, Z.; Sándor, Z.J.; Bogár, K.; Kovács, G.; Molnár, M.; Lázár, B.; Goda, K.; Gyöngy, Z.; Ritter, Z.; Nánási, P., Jr.; Horváth, Á.; Ljubobratović, U. Effects of Hydrostatic Pressure Treatment of Newly Fertilized Eggs on the Ploidy Level and Karyotype of Pikeperch Sander lucioperca (Linnaeus, 1758)Life 2021, 11, 1296.

Xie Xuan, Tichopád Tomáš, Kislik Galina, Langerová Lucie, Abaffy Pavel, Šindelka Radek, Franěk Roman, Fučíková Michaela, Steinbach Christoph, Shah Mujahid Ali, Šauman Ivo, Chen Fan, Pšenička Martin. Isolation and Characterization of Highly Pure Type A Spermatogonia From Sterlet (Acipenser ruthenus) Using Flow-Cytometric Cell Sorting. Frontiers in Cell and Developmental Biology, vol.9, 2021.

Benjamin Geffroy, Mathieu Besson, Nuria Sanchez-Baizan, Frederic Clota, Alexander Goikoetxea, Bastien Sadoul, François Ruelle, Marie-Odile Blanc, Hugues Parrinello, Sophie Hermet, Eva Blondeau-Bidet, Marine Pratlong, Francesc Piferrer, Marc Vandeputte and François Allal. Unraveling the genotype by environment interaction in a thermosensitive fish with a polygenic sex determination system. Proceedings of the National Academy of Sciences, Vol.118, Issue:50, 2021. This publication is resulting from a TNA project.

Fernando Naya-Català, Juan A. Martos-Sitcha, Verónica de las Heras, Paula Simó-Mirabet, Josep À. Calduch-Giner, Jaume Pérez-Sánchez. Targeting the Mild-Hypoxia Driving Force for Metabolic and Muscle Transcriptional Reprogramming of Gilthead Sea Bream (Sparus aurata) Juveniles. Biology 2021, 10(5), 416

Fernando Naya-Catala’, Julia A. Wiggers, M. Carla Piazzon, Manuel I. López-Martínez, Itziar Estensoro, Josep A. Calduch-Giner, M. Carmen Martinez-Cuesta, Teresa Raquena, Ariadna Sitja’-Bobadilla, Marta Miguel, Jaume Perez-Sanchez. Modulation of Gilthead Sea Bream Gut Microbiota by a Bioactive Egg White Hydrolysate: Interactions Between Bacteria and Host Lipid Metabolism. Frontiers in Marine Science 8:698484. This publication is resulting from a TNA project.

Solé-Jiménez P, Naya-Català F, Piazzon MC, Estensoro I, Calduch-Giner JÀ, Sitjà-Bobadilla A, Van Mullem D, Pérez-Sánchez J. (2021) Reshaping of gut microbiota in gilthead sea bream fed microbial and processed animal proteins as the main dietary protein source. Frontiers in Marine Science 8: 705041. This publication is resulting from a TNA project.

Hung, T.Q., Zare, M., Prokesova, M., Gebauer, T., A.C. Elia, A.C., Colombino, E., Ferocino, I., Caimi, C., Gai, F., Gasco, L., Stejskal, V.,    How does pikeperch (Sander lucioperca) respond to dietary insect meal Hermetia illucens? Investigation on intestinemicroflora, histomorphology, and antioxidant biomarkers. Frontiers in Marine Science 8: 680942. (IF 2021 – 4.440). This publication is resulting from a TNA project.

Rosell-Moll, E., Piazzon, M.C., Sosa, J., Ferrer, M.A., Cabruja, E., Vega, A., Calduch-Giner, J.A., Sitjà-Bobadilla, A., Lozano, M., Montiel-Nelson, J.A., Afonso, J.M., Pérez-Sánchez, J. (2021) Use of accelerometer technology for individual tracking of activity patterns, metabolic rates and welfare in farmed gilthead sea bream (Sparus aurata) facing a wide range of stressors. Aquaculture 539.

Basto, A., Calduch-Giner, J., Oliveira, B., Petit, L., Sá, T., Maia, M.R., Fonseca, S.C., Matos, E., Pérez-Sánchez, J., Valente, L.M. (2021), The use of defatted Tenebrio molitor larvae meal as a main protein source is supported in European sea bass (Dicentrarchus labrax) by data on growth performance, lipid metabolism and flesh quality. Frontiers in Physiology 12. This publication is resulting from a TNA project.

Moroni, F., Naya-Catala, F., Piazzon, C., Rimoldi, S., Calduch-Giner, J., Giardini, A., Martinez, I., Brambilla, F., Perez-Sanchez, J., Terova, G. (2021). The Effects of Nisin-Producing Lactococcus lactis Strain Used as Probiotic on Gilthead Sea Bream (Sparus aurata) Growth, Gut Microbiota, and Transcriptional Response. Front. Mar. Sci. 8:364. This publication is resulting from a TNA project.

Moreira, C., Paiola, M., Duflot, A., Varo, I., Sitja-Bobadilla, A., Knigge, T., Pinto, P., Monsinjon, T. (2021). The influence of 17β-oestradiol on lymphopoiesis and immune system ontogenesis in juvenile sea bass, Dicentrarchus labrax.Developmental & Comparative Immunology, 118;104011. This publication is resulting from a TNA project.

A. Byadgi O, Massimo M, Dirks RP, Pallavicini A, Bron JE, Ireland JH, Volpatti D, Galeotti M & Beraldo P (2021) Innate immune-gene expression during experimental amyloodiniosis in European seabass (Dicentrarchus labrax). Veterinary Immunology and Immunopathology, 234, Art. No.: 110217.

Franek, R., Kaspar, V. Shah, M.A., Gela, D., Psenicka, M. (2021). Production of common carp donor-derived offspring from goldfish surrogate broodstock. Aquaculture 534: 736252.

Kolarevic J, Calduch-Giner J, Espmark ÅM, Evensen T, Sosa J, Pérez-Sánchez J. A novel miniaturized biosensor for monitoring Atlantic salmon swimming activity and respiratory frequency. Animals 11:2403 (2021).

Naya-Català F, do Vale Pereira G, Piazzon MC, Fernandes AM, Calduch-Giner JA, Sitjà-Bobadilla A, Conceição LEC, Pérez-Sánchez J. The Cross-talk Between Intestinal Microbiota and Host Gene Expression in Juveniles of Gilthead Sea Bream (Sparus aurata). Insights in Fish Feeds for Increased Circularity and Resource Utilization. Frontiers in Physiology 12:748265 (2021). This publication is resulting from a TNA project.

Lukić, J., Stanisavljević, N., Vukotić, G., Terzić-Vidojević, A., Begović, J., Golić, N., & Ljubobratović, U. (2021). Enrichment of larval fish feed with free amino acids and proteins by coating with Lactobacillus paracasei subsp. paracasei BGHN14 homogenate. Turkish Journal of Fisheries and Aquatic Sciences, 21, 569-573. This publication is resulting from a TNA project.

Ljubobratović, U., Fazekas, G., Koljukaj, A., Ristović, T., Vass, V., Ardó, L., Stanisavljević, N., Vukotić, G., Pešić, M., Milinčić, D., Kostić, A., Lukić, J. (2021). Pike-perch larvae growth in response to administration of lactobacilli-enriched inert feed during first feeding. Aquaculture, 542, 736901. This publication is resulting from a TNA project.

Hijran Yavuzcan Yildiz, Stavros Chatzifotis, Panagiotis Anastasiadis, Giuliana Parisi & Nikos Papandroulakis (2021), Testing of the Salmon Welfare Index Model (SWIM 1.0) as a computational welfare assessment for sea-caged European sea bass, Italian Journal of Animal Science, 20:1, 1423-1430. This publication is resulting from a TNA project.

Özgür, M. E., Erdoğan, S., Rašković, B., Fazekas, G., & Ljubobratović, U. (2021). Mid-autumn spermiation in outdoor-cultured pikeperch (Sander lucioperca) using different gonadoliberin application strategies. Aquaculture Reports, 21, 100891. This publication is resulting from a TNA project.


Rodde, C., Vandeputte, M., Allal, F., Besson, M., Clota, F., Vergnet, A., Benzie, J.A.H., de Verdal, H. (2020). Population, Temperature and Feeding Rate Effects on Individual Feed Efficiency in European Sea Bass (Dicentrarchus labrax). Front. Mar. Sci. Vol.7, 2020.

Rodde, C., de Verdal, H., Lefebvre, S., Menniti, C., Vandeputte, M., Clota, F., Allal, F., McKenzie, D.J., Benzie, J.A.H., Nahon, S. (2020). Variations in isotope incorporation rates and trophic discrimination factors of carbon and nitrogen stable isotopes in scales from three European sea bass (Dicentrarchus labrax) populations. Journal of Experimental Marine Biology and Ecology 533 (151468).

Betancor, M.B., Sprague, M., Ortega, A., de la Gandara, F., Tocher, D.R., Ruth, R., Perkins, E., Mourente, G. (2020). Central and peripheral clocks in Atlantic bluefin tuna (Thunnus thynnus, L.): Daily rhythmicity of hepatic lipid metabolism and digestive genes. Aquaculture 523: 735220. This publication is resulting from a TNA project.

Lallias, D., Bernard, M., Ciobotaru, C., Dechamp, N., Labbe, L., Goardon, L., Le Calvez, J-M., Bideau, M., Fricot, A., Prezelin, A., Charles, M., Moroldo, M., Cousin, X., Bouchez, O., Roulet, A., Quillet, E., Dupont-Nivet, M. (2020). Sources of variation of DNA methylation in rainbow trout: combined effects of temperature and genetic background. Epigenetics.

Schraml, Rudolf & Hofbauer, Heinz & Jalilian, Ehsaneddin & Bekkozhayeva, Dinara & Saberioon, Mehdi & Cisar, Petr & Uhl, Andreas. (2020). Towards fish individuality-based aquaculture. IEEE Transactions on Industrial Informatics. PP. This publication is resulting from a TNA project.

Papácek, S., Petera, K., Císar, P., Stejskal, V., Saberioon, M. (2020). Experimental & Computational Fluid Dynamics Study of the Suitability of Different Solid Feed Pellets for Aquaculture Systems. Appl. Sci. 10(19): 6954.

Fjelldal, P.G., Hansen, T.J., Wargelius, A., Ayllon, F., Glover, K.A., Schulz, R.W., Fraser, T.W.K. (2020). Development of supermale and all-male Atlantic salmon to research the vgll3 allele – puberty link. BMC Genetics 21:123.

Hao, R., Pan, J., Tilami, S.K., Shah, B.R., Mráz, J. (2020). Post‐mortem quality changes of common carp (Cyprinus carpio ) during chilled storage from two culture systems. J Sci Food Agric (details pending).

Hansen, T.J., Penman, D., Glover, K.A., Fraser, T.W.K., Vågseth, T., Thorsen, A., Sørvik, A.G.E., Fjelldal, P.G. (2020). Production and verification of the first Atlantic salmon (Salmo salar L.) clonal lines. BMC Genet 21: 71.

Ferrer, M.A., Calduch-Giner, J.A., Díaz, M., Sosa, J., Rosell-Moll, E., Santana Abril, J., Santana Sosa, G., Bautista Delgado, T., Carmona, C., Martos-Sitcha, J.A., Cabruja, E., Afonso, J.M., Vega, A., Lozano, M.,  Montiel-Nelson, J.A., Pérez-Sánchez, J. (2020). From operculum and body tail movements to different coupling of physical activity and  respiratory frequency in farmed gilthead sea bream and European sea bass. Insights on  aquaculture biosensingComputers and Electronics in Agriculture. 175:105531.

Nácher-Mestre, J., Beltrán, E., Strachan, F., Dick, J.R., Pérez-Sánchez, J., Berntssen, M.H.G., Tocher, D.R. (2020). No transfer of the non-regulated mycotoxins, beauvericin and enniatins, from feeds to farmed fish reared on plant-based diets. Food Chemistry. 323:126773. This publication is resulting from a TNA project.

Baekelandt, S., Milla, S., Cornet, V., Flamion, E., Ledore, Y., Redivo, B., Antipine, S., Mandiki, S.N.M., Houndji, A., El Kertaoui, N., Kestemont, P. (2020). Seasonal simulated photoperiods influence melatonin release and immune markers of pike perch Sander lucioperca. Scientific Reports. 10:2650.

Mes, D., Palstra, A.P., Henkel, C.V., Mayer, I., Vindas, M.A. (2020). Swimming exercise enhances brain plasticity in fish. Royal Society Open Science. 7:1.

Panettieri, V., Chatzifotis, S., Messina, CM., Olivotto, I., Manuguerra, S., Randazzo, B., Ariano, A., Bovera, F., Santulli, A., Severino, L., Piccolo, G. (2020). Honey Bee Pollen in Meagre (Argyrosomus regius) Juvenile Diets: Effects on Growth, Diet Digestibility, Intestinal Traits, and Biochemical Markers Related to Health and Stress. Animals 10(20): 231. This publication is resulting from a TNA project.

Lukic, J., Stanisavljevic, N., Vukotic, G., Kosanovic, D., Terzic-Vidojevic, A., Begovic, J., Golic, N., Jeney, G., Ljubobratovic, U. (2020). Lactobacillus salivarius BGHO1 and Lactobacillus reuteri BGGO6-55 modify nutritive profile of Artemia franciscana nauplii in a strain ratio, dose and application timing-dependent mannerAnimal Feed Science and Technology 259: 114356.

Dambrine, C, Huret, M, Woillez, M, Pecquerie, L., Allal, F., Servili, A., dePontual, H. (2020). Contribution of a bioenergetics model to investigate the growth and survival of European seabass in the Bay of Biscay – English Channel area. Ecological Modelling. 423.

Kruusmaa, M., Gkliva, R., Tuhtan, J.A., Tuvikene, A., Alfredsen, J.A. (2020). Salmon behavioural response to robots in an aquaculture sea cageR. Soc. open sci. 7191220. This publication is resulting from a TNA project.

Nousias, O., Tsakogiannis, A., Duncan, N., Villa, J., Tzokas, K., Estevez, A., Chatziplis, D., Tsigenopoulos, C.S. (2020). Parentage assignment, estimates of heritability and genetic correlation for growth-related traits in meagre Argyrosomus regius. Aquaculture 518:734663.

Ljubobratovic, U., Kosanovic, D., Demény, F.Z., Krajcsovics, A., Vukotic, G., Stanisavljevic, N., Golic, N., Jeney, G., Lukic, J. (2020). The effect of live and inert feed treatment with lactobacilli on weaning success in intensively reared pike-perch larvae. Aquaculture 516:734608.

Monikh, F.A., Chupani, L., Smerkova, K., Bosker, T., Cizar, P., Krzyzanek, V., Richtera, L., Franek, R., Zuskova, E., Skoupy, R., Darbha, G.K., Vijver, M., Valsami-Jones, E., Peijnenburg, W., (2020). Engineered nanoselenium supplemented fish diet: toxicity comparison with ionic selenium and stability against particle dissolution, aggregation and release. Environ. Sci.:Nano 7; 2325-2336.

Huyben, D., Rimoldi, S., Ceccotti, C., Montero, D., Betancor, M., Iannini, F., Terova, G.  (2020). Effect of dietary oil from Camelina sativa on the growth performance, fillet fatty acid profile and gut microbiome of gilthead Sea bream (Sparus aurata)PeerJ. 8 e-10430. This publication is resulting from a TNA project.

Betancor, M.B., MacEwan, M.Sprague, X.Gong, D.Montero, L.Han, J.A.Napier, F.Norambuena, M.Izquierdo, D.R.Tocher. (2020). Oil from transgenic Camelina sativa as a source of EPA and DHA in feed for European sea bass (Dicentrarchus labrax L.). Aquaculture 530:735759. This publication is resulting from a TNA project.

Ordóñez-Grande, B., Guerreiro, P.M., Sanahuja, I., Fernández-Alacid, L., Ibarz, A. (2020). Evaluation of an Acute Osmotic Stress in European Sea Bass via Skin Mucus BiomarkersAnimals 10:1546.

Garcia de la serrana, D., Pérez, M., Nande, M., Hernández-Urcera, J., Pérez, E., Coll-Lladó, C., Hollenbeck, C. (2020). Regulation of growth-related genes by nutrition in paralarvae of the common octopus (Octopus vulgaris)Gene 747:144670. This publication is resulting from a TNA project.


Kalinowski, C.T., Larroquet, L., Véron, V., Robaina, L., Izquierdo, M.S., Panserat, S., Kaushik, S., Fontagné-Dicharry, S., 2019. Influence of dietary astaxanthin on the hepatic oxidative stress response caused by episodic hyperoxia in rainbow trout. Antioxidants 8(12): 626.

Sprague, M., Xu, G., Betancor, M.B., Olsen, R.E., Torrissen, O., Glencross, B.D., Tocher, D.R. (2019). Endogenous production of n-3 long-chain PUFA from first feeding and the influence of dietary linoleic acid and the α-linolenic:linoleic ratio in Atlantic salmon (Salmo salar). British Journal of Nutrition 122(10): 1091-1102. This publication is resulting from a TNA project.

Ruiz, M.A., Hernández-Cruz, C.M., Caballero, M.J., Fernández-Palacios, H., Saleh, R., Izquierdo, M.S., Betancor, M.B. (2019). Incidence of systemic granulomatosis is modulated by the dietary supplementation of vitamin E and C in meagre (Argyrosomus regius) larvae fed inert microdiets. Aquaculture 506: 139-147.

Torno, C., Staats, S., Fickler, A., de Pascual-Teresa, S., Izquierdo, M.S., Rimbach, G., Schulz, C. (2019). Combined effects of nutritional, biochemical and environmental stimuli on growth performance and fatty acid composition of gilthead sea bream (Sparus aurata)PLoS ONE 14(5): e0216611.

Toomey, L., Blaha, M., Mauduit, E., Vanina, T., Baratcabal, M., Ledore, Y., Vesala, S., Fontaine, P., Pasquet, A., Lecocq, T. (2019). When behavioural geographic differentiation matters: inter-populational comparison of aggressiveness and group structure in the European perch. Aquaculture International. 27:1177–1191.

Saberioon, M., Cisar, P., Labbe, L., Soucek, P., Pelissier, P. (2019). Spectral imaging application to discriminate different diets of live rainbow trout (Oncorhynchus mykiss). Computers and Electronics in Agriculture. 165:104949.

Novak, A., Cisar, P., Bruneau, M., Lotton, P., Simon, L. (2019). Localization of sound-producing fish in a water-filled tank. The Journal of the Acoustical Society of America. 146:4842.

Franek, R., Tichopad, T., Steinbach, C., Xie, X., Lujic, J., Marinovic, Z., Horvath, A., Kaspar, V., Psenicka, M. (2019). Preservation of female genetic resources of common carp through oogonial stem cell manipulation. Cryobiology. 87: 78-85.

Franek, R., Baloch, A.R., Kaspar, V., Saito, T., Fujimoto, T., Arai., Psenicka., M. (2019) Isogenic lines in fish – a critical review. Reviews in Aquaculture. 1-23.

Franek, R., Marinovic, Z., Lujic, J., Urbanyi, B., Fucikova, M., Kaspar, V., Psenicka, M., Horvath, A. (2019). Cryopreservation and transplantation of common carp spermatogonia. PLoS ONE 14(4): e0205481.

Sitja-Bobadilla, A., Gil-Solsona, R., Estensoro, I., Piazzon, Carla., Martos-Sitcha, JA., Picard-Sánchez, A., Fuentes, J., Vicente Sancho, J., CalduchGiner, JA., Hernández, F., PérezSánchez, J. (2019). Disruption of gut integrity and permeability contributes to enteritis in a fish-parasite model:a story told from serum metabolomics. Parasites & Vectors. 12:486. This publication is resulting from a TNA project.

Forner-Piquer, I., Fakriadis, I., Mylonas, CC., Piscitelli, F., Di Marzo, V., Maradonna, F., Calduch-Giner, J., Pérez-Sánchez, J.,  Carnevali, O. (2019). Effects of dietary bisphenol A on the reproductive function of gilthead sea bream (Sparus aurata) testesInternational Journal of Molecular Sciences. 20:5003. This publication is resulting from a TNA project.

Peixoto, MJ., Ferraz, R., Magnoni, LJ., Pereira, R., Gonçalves, JF., Calduch-Giner, J., Pérez-Sánchez, J., Rodrigo, O. Protective effects of seaweed supplemented diet on antioxidant and immune responses in European seabass (Dicentrarchus labrax) subjected to bacterial infection. (2019). Scientific Reports. 9:16134. This publication is resulting from a TNA project.

Pérez-Sánchez, J., Naya-Català, F., Soriano, B., Piazzon, MC., Hafez, A., Gabaldón, T., Llorens, C., Sitjà-Bobadilla, A., Calduch-Giner, JA. (2019) Genome Sequencing and Transcriptome Analysis Reveal Recent Species-specific Gene Duplications in the Plastic Gilthead Sea Bream (Sparus aurata). Frontiers in Marine Science.

Forner-Piquer, I., Mylonas C.C., Fakriadis, I., Papadaki, M., Piscitelli, F., Di Marzo, V., Calduch-Giner, J., Pérez-Sánchez, J., Carnevali, O. (2019). Effects of diisononyl phthalate (DiNP) on the endocannabinoid and reproductive systems of male gilthead sea bream (Sparus aurata) during the spawning season. Archives of Toxicology. 93, 727-741. This publication is resulting from a TNA project.

Martos-Sitcha, J.A., Sosa, J., Ramos-Valido, D., Bravo, F.J., Carmona-Duarte, C., Gomes, H.L., Calduch-Giner, J.À., Cabruja, E., Vega, A., Ferrer, M.Á., Lozano, M., Montiel-Nelson, J.A., Afonso, J.M., Pérez-Sánchez, J. (2019). Ultra-low power sensor devices for monitoring physical activity and respiratory frequency in farmed fish. Frontiers in Physiology. 10, 667.

Martos-Sitcha J.A., Simó-Mirabet, P., de las Heras, V., Calduch-Giner, J.À., and Pérez-Sánchez, J.  (2019). Tissue-Specific Orchestration of Gilthead Sea Bream Resilience to Hypoxia and High Stocking Density. Frontiers in Physiology. 10, 840.

Song, Y., Alami-Durante, H., Skiba-Cassy, S., Marandel, L., Panserat, S. (2019). Higher glycolytic capacities in muscle of carnivorous rainbow trout juveniles after dietary carbohydrate stimulus at first feeding. BMC Nutrition & Metabolism. 16 :77.

Song, X., Marandel, L., Skiba-Cassy, S., Corraze, G., Dupont-Nivet, M., Quillet, E., Geurden, I., Panserat, S. (2018). Regulation by dietary carbohydrates of intermediary metabolism in liver and muscle of two isogenic lines of rainbow trout. Front. Physiol. 9:1579.

Lukic, J., Vukotic, G., Stanisavljevic, N., Kosanovic, D., Molnar, Z., Begovic, J., Terzic-Vidojevic, A., Jeney, G., Ljubobratovic, U. (2019). Solid state treatment with Lactobacillus paracasei subsp. paracasei BGHN14 and Lactobacillus rhamnosus BGT10 improves nutrient bioavailability in granular fish feed. PLoS ONE 14(7): e0219558.


Riesco, M., Félix, F., Matias, D., Joaquim, S., Suquet, M. and Cabrita, E. (2018). Comparative study on cellular and molecular responses in oyster sperm revealed different susceptibilities to cryopreservationAquaculture, 498, pp.223-229.

Veron, V., Marandel, L., Liu, J. et al. (2018) DNA methylation of the promoter region of bnip3 and bnip3l genes induced by metabolic programming. BMC Genomics, 19: 677.

Saberioon, M. and Císař, P. (2018). Automated within tank fish mass estimation using infrared reflection system. Computers and Electronics in Agriculture, 150, pp.484-492.

Marcos-López, M., Calduch-Giner, J.A., Mirimin, L., MacCarthy, E., Rodger, H.D., O’Connor, I., Sitjà-Bobadilla, A., Pérez-Sánchez, J., Piazzon, M.C. (2018) Gene expression analysis of Atlantic salmon gills reveals mucin 5 and interleukin 4/13 as key molecules during amoebic gill diseaseScientific Reports 8:13689. This publication is resulting from a TNA project.

Forner-Piquer, I., Mylonas, C.C., Calduch-Giner, J., Maradonna, F., Gioacchini, G., Allarà, M., Piscitelli, F., Di Marzo, V., Pérez-Sánchez, J., Carnevali, O. (2018) Endocrine disruptors in the diet of male Sparus aurata: Modulation of the endocannabinoid system at the hepatic and central level by Di-isononyl phthalate and Bisphenol A. Environment International. 119, 54-65.

Hu, H., Liu, J., Plagnes-Juan, E., Herman, A., Leguen, I., Goardon, L., Geurden, I., Panserat, S., Marandel, L. (2018). Programming of the glucose metabolism in rainbow trout juveniles after chronic hypoxia at hatching stage combined with a high dietary carbohydrate: Protein ratios intake at first-feeding. Aquaculture. 488, 1-8.

Pérez-Sánchez, J., Kaushik, S., Corraze, G., Izquierdo, M., Torrecillas, S., Sitjà-Bobadilla, A., Estensoro, I., Piazzon, M.C., Conceição, L.E.C., Calduch-Giner, J., Nácher-Mestre, J., Afonso López, J.M. (2018). Fish Nutrition Research: Recent Advances and Perspectives. CSIC: Spain.

Song, X., Marandel, L., Dupont-Nivet, M., Quillet, E., Geurden, I., Panserat, S. (2018) Hepatic glucose metabolic responses to digestible dietary carbohydrates in two isogenic lines of rainbow troutBiol Open. 7, bio032896.


Glover, K.A., Hansen, T., Besnier, F., Solberg, M.F., Fjelldal, P.G., Eide, A.G.S., Dalvin, S., Nilsen, F. (2017). Cloned and outbred Atlantic salmon display equal parasite dispersion when infected with the salmon louse. Aquaculture. 480.

Liu, J., Dias, K., Plagnes-Juan, E., Veron, V., Panserat, S., Marandel, L. (2017). Long-term programming effect of embryonic hypoxia exposure and high-carbohydrate diet at first feeding on glucose metabolism in juvenile rainbow trout. J. Exp. Biol. 220, 3686–3694.

Liu, J., Plagnes-Juan, E.,Geurden, I., Panserat, S., Marandel, L. (2017). Exposure to an acute hypoxic stimulus during early life affects the expression of glucose metabolism-related genes at first-feeding in troutScientific Reports. 7, 363.

Ljubobratovic U, Kosanovic D, Vukotic G, Molnar Z, Stanisavljevic N, Ristovic T, Peter G, Lukic J, Jeney G (2017). Supplementation of lactobacilli improves growth, regulates microbiota composition and suppresses skeletal anomalies in juvenile pike-perch (Sander lucioperca) reared in recirculating aquaculture system (RAS): a pilot study. Research in Veterinary Science. 115: 451-462. This publication is resulting from a TNA project.

Magnoni, L., Martos-Sitcha J.A., Queiroz, A., Calduch-Giner, J.A., Magalhães Gonçalves, J.F., Rocha, C.M.R., Abreu, H.T., Schrama, J.W., Ozorio, R.O.A., Pérez-Sánchez, J. (2017). Dietary supplementation of heat-treated Gracilaria and Ulva seaweeds enhanced acute hypoxia tolerance in gilthead sea bream (Sparus aurata). Biology Open. 6(6). This publication is resulting from a TNA project.

Martos-Sitcha JA, Bermejo-Nogales A, Calduch-Giner JA, Pérez-Sánchez J (2017). Gene expression profiling of whole blood cells supports a more efficient mitochondrial respiration in hypoxia-challenged gilthead sea bream (Sparus aurata). Frontiers in Zoology. 14: 34.


Estensoro I, Ballester-Lozano G, Benedito-Palos L, Grammes F, Martos-Sitcha JA, Mydland L-T, Calduch-Giner JA, Fuentes J, Karalazos V, Ortiz A, Øverland M, Sitjà-Bobadilla A, Pérez-Sánchez J (2016). Dietary Butyrate Helps to Restore the Intestinal Status of a Marine Teleost (Sparus aurata) Fed Extreme Diets Low in Fish Meal and Fish Oil. PLOSOne, 7(1). This publication is resulting from a TNA project.